Stable release (easiest)

CellRegMap is implemented as a Python package. To install CellRegMap using the pip python installer, enter:

pip install cellregmap

in your command line.

Developmental mode

To use the latest features of CellRegMap you can install the latest version from GitHub by entering:

git clone https://github.com/limix/CellRegMap.git
cd CellRegMap
pip install -e .

in your command line.

Installation using a Docker image

If you use Docker, you can also pull the pre-build image from dockerhub.